- c -

• calculateFlushIntervals() : Job
• callGetOpt() : AbstractAlignerParameters
• changePath() : SpecialRowsPartition
• circularLoad() : Buffer , Buffer2
• circularSkip() : Buffer2
• circularStore() : Buffer2 , Buffer
• clearPrunedBlocks() : AbstractDiagonalAligner
• clearSpecialRowsArea() : Job
• clearSpecialRowsAreas() : Job
• clearStatistics() : AbstractBlockAligner , AbstractDiagonalAligner , IAligner
• clone() : InitialCellsReader
• close() : BlocksFile , TeeCellsReader , URLCellsReader , CrosspointsFile , URLCellsWriter , SpecialRowReader , BufferedCellsReader , FirstRow , SpecialRow , BufferedCellsWriter , SpecialRowFile , SpecialRowRAM , CellsReader , CellsWriter , DummyCellsReader , DummyCellsWriter , FileCellsReader , FileCellsWriter , FileStream , InitialCellsReader , ReversedCellsReader , SocketCellsReader , SocketCellsWriter , SplitCellsReader
• cmd_connect() : MasaNetCLI
• cmd_create_ring() : MasaNet , MasaNetCLI
• cmd_discover() : MasaNet
• cmd_help() : MasaNetCLI
• cmd_peer_request() : MasaNet
• cmd_quit() : MasaNetCLI
• cmd_show_connected() : MasaNetCLI
• cmd_show_connected_remote() : MasaNetCLI
• cmd_show_discovered() : MasaNetCLI
• cmd_show_ring() : MasaNetCLI
• cmd_status() : MasaNetCLI
• cmd_status_request() : MasaNet
• cmd_test_ring() : MasaNet , MasaNetCLI
• cmd_undiscover() : MasaNet
• CmdCreateRing() : CmdCreateRing
• CmdDiscover() : CmdDiscover
• CmdJoin() : CmdJoin
• CmdNotifyScore() : CmdNotifyScore
• CmdPeerList() : CmdPeerList
• CmdPeerRequest() : CmdPeerRequest
• CmdPeerResponse() : CmdPeerResponse
• CmdStatusRequest() : CmdStatusRequest
• CmdStatusResponse() : CmdStatusResponse
• CmdTestRing() : CmdTestRing
• CmdUndiscover() : CmdUndiscover
• Command() : Command
• command_generator() : MasaNetCLI
• compare_files() : AlignerTester
• ConfigParser() : ConfigParser
• Configs() : Configs
• configureGrid() : AbstractBlockAligner , AbstractDiagonalAligner
• connectToPeer() : MasaNet
• console_completion() : MasaNetCLI
• containsId() : CmdTestRing
• continueFromLastRow() : SpecialRowsPartition
• copy() : PeerList
• copyData() : Sequence
• copyFrom() : MasaNetStatus
• CPUBlockProcessor() : CPUBlockProcessor
• createAutoFlushThread() : Buffer
• createAutoLoadThread() : Buffer
• createBufferFromURL() : BufferFactory
• createChain() : SpecialRowsPartition
• createDispatcherQueue() : AbstractAlignerSafe
• createEvent() : Timer
• createGrid() : AbstractAligner
• createPartition() : SpecialRowsArea
• createPath() : Job
• createReverseData() : SequenceData
• createRing() : MasaNet
• createSplittedPartitions() : SpecialRowsArea
• creator() : CmdStatusResponse , CmdUndiscover , CmdStatusRequest , CmdPeerResponse , CmdTestRing , CmdDiscover , CmdPeerRequest , CmdNotifyScore , CmdJoin , CmdCreateRing
• CrosspointsFile() : CrosspointsFile