Configs Class Reference

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Detailed Description

Definition at line 60 of file Configs.hpp.

#include <Configs.hpp>

List of all members.

Public Member Functions
	Configs ()
virtual	~Configs ()
void	loadFile (string filename)
void	loadConfigs (const char **configs)
void	printFile (FILE *file)
int	getSRAStrategy (int stage)
int	getSRACompression (int stage)
long long	getSRADiskSize (int stage)
long long	getSRARamSize (int stage)
bool	isBlockPruningEnabled (int stage)
int	getMaxIterations (int stage)
int	getMaxPartitionSize (int stage)
int	getPruningInitialScore ()
Private Attributes
int	sra_strategy [7]
int	sra_compression [7]
long long	disk_size [7]
long long	ram_size [7]
int	block_pruning [7]
int	max_iterations [7]
int	max_partition_size [7]
int	stage1_pruning_initial_score
int	stage4_execution_type
string	sra_path [7]
string	work_path
string	sequences_path
ConfigParser *	parser

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Constructor & Destructor Documentation

Configs::Configs

(

)

Definition at line 47 of file Configs.cpp.

Configs::~Configs

(

)

[virtual]

Definition at line 174 of file Configs.cpp.

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Member Function Documentation

int Configs::getMaxIterations

(

int

stage

)

Definition at line 265 of file Configs.cpp.

int Configs::getMaxPartitionSize

(

int

stage

)

Definition at line 269 of file Configs.cpp.

int Configs::getPruningInitialScore

(

)

Definition at line 273 of file Configs.cpp.

int Configs::getSRACompression

(

int

stage

)

Definition at line 233 of file Configs.cpp.

long long Configs::getSRADiskSize

(

int

stage

)

Definition at line 241 of file Configs.cpp.

long long Configs::getSRARamSize

(

int

stage

)

Definition at line 249 of file Configs.cpp.

int Configs::getSRAStrategy

(

int

stage

)

Definition at line 225 of file Configs.cpp.

bool Configs::isBlockPruningEnabled

(

int

stage

)

Definition at line 257 of file Configs.cpp.

void Configs::loadConfigs

(

const char **

configs

)

Definition at line 205 of file Configs.cpp.

void Configs::loadFile

(

string

filename

)

Definition at line 180 of file Configs.cpp.

void Configs::printFile

(

FILE *

file

)

Definition at line 221 of file Configs.cpp.

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Member Data Documentation

int Configs::block_pruning[7] [private]

Definition at line 84 of file Configs.hpp.

long long Configs::disk_size[7] [private]

Definition at line 82 of file Configs.hpp.

int Configs::max_iterations[7] [private]

Definition at line 85 of file Configs.hpp.

int Configs::max_partition_size[7] [private]

Definition at line 86 of file Configs.hpp.

ConfigParser* Configs::parser [private]

Definition at line 96 of file Configs.hpp.

long long Configs::ram_size[7] [private]

Definition at line 83 of file Configs.hpp.

string Configs::sequences_path [private]

Definition at line 94 of file Configs.hpp.

int Configs::sra_compression[7] [private]

Definition at line 81 of file Configs.hpp.

string Configs::sra_path[7] [private]

Definition at line 92 of file Configs.hpp.

int Configs::sra_strategy[7] [private]

Definition at line 80 of file Configs.hpp.

int Configs::stage1_pruning_initial_score [private]

Definition at line 88 of file Configs.hpp.

int Configs::stage4_execution_type [private]

Definition at line 89 of file Configs.hpp.

string Configs::work_path [private]

Definition at line 93 of file Configs.hpp.

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The documentation for this class was generated from the following files:

• Configs.hpp
• Configs.cpp