CrosspointsFile Class Reference

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Detailed Description

Definition at line 32 of file CrosspointsFile.hpp.

#include <CrosspointsFile.hpp>

List of all members.

Public Member Functions
	CrosspointsFile (string filename)
virtual	~CrosspointsFile ()
void	loadCrosspoints ()
void	reverse (int seq0_len, int seq1_len)
void	setAutoSave ()
void	write (int i, int j, int score, int type)
void	write (crosspoint_t crosspoint)
void	close ()
void	writeToFile (string filename)
void	save ()
int	getLargestPartitionSize (int *max_i=NULL, int *max_j=NULL)
Private Member Functions
void	open ()
Private Attributes
string	filename
string	tmpFilename
FILE *	file
bool	autoSave

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Constructor & Destructor Documentation

CrosspointsFile::CrosspointsFile

(

string

filename

)

Definition at line 29 of file CrosspointsFile.cpp.

CrosspointsFile::~CrosspointsFile

(

)

[virtual]

Definition at line 36 of file CrosspointsFile.cpp.

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Member Function Documentation

void CrosspointsFile::close

(

)

Definition at line 120 of file CrosspointsFile.cpp.

int CrosspointsFile::getLargestPartitionSize	(	int *	max_i = NULL,
		int *	max_j = NULL
	)

Definition at line 71 of file CrosspointsFile.cpp.

void CrosspointsFile::loadCrosspoints

(

)

Definition at line 40 of file CrosspointsFile.cpp.

void CrosspointsFile::open

(

)

[private]

Definition at line 110 of file CrosspointsFile.cpp.

void CrosspointsFile::reverse	(	int	seq0_len,
		int	seq1_len
	)

Definition at line 161 of file CrosspointsFile.cpp.

void CrosspointsFile::save

(

)

Definition at line 152 of file CrosspointsFile.cpp.

void CrosspointsFile::setAutoSave

(

)

Definition at line 94 of file CrosspointsFile.cpp.

void CrosspointsFile::write	(	int	i,
		int	j,
		int	score,
		int	type
	)

Definition at line 132 of file CrosspointsFile.cpp.

void CrosspointsFile::write

(

crosspoint_t

crosspoint

)

Definition at line 141 of file CrosspointsFile.cpp.

void CrosspointsFile::writeToFile

(

string

filename

)

Definition at line 99 of file CrosspointsFile.cpp.

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Member Data Documentation

bool CrosspointsFile::autoSave [private]

Definition at line 53 of file CrosspointsFile.hpp.

FILE* CrosspointsFile::file [private]

Definition at line 52 of file CrosspointsFile.hpp.

string CrosspointsFile::filename [private]

Definition at line 50 of file CrosspointsFile.hpp.

string CrosspointsFile::tmpFilename [private]

Definition at line 51 of file CrosspointsFile.hpp.

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The documentation for this class was generated from the following files:

• CrosspointsFile.hpp
• CrosspointsFile.cpp