Detailed Description

Definition at line 39 of file CPUBlockProcessor.hpp.

Inheritance diagram for CPUBlockProcessor:

Public Member Functions
	CPUBlockProcessor ()
virtual	~CPUBlockProcessor ()
virtual void	setSequences (const char seq0, const char seq1, int seq0_len, int seq1_len)
virtual void	unsetSequences ()
virtual score_t	processBlock (cell_t row, cell_t col, const int i0, const int j0, const int i1, const int j1, const int recurrenceType)
	Executes the SW/NW recurrence function for the given block.
Private Attributes
const char *	seq0
const char *	seq1

Constructor & Destructor Documentation

CPUBlockProcessor::CPUBlockProcessor ( )

Definition at line 35 of file CPUBlockProcessor.cpp.

CPUBlockProcessor::~CPUBlockProcessor ( ) [virtual]

Definition at line 40 of file CPUBlockProcessor.cpp.

score_t CPUBlockProcessor::processBlock	(	cell_t *	row,
		cell_t *	col,
		const int	i0,
		const int	j0,
		const int	i1,
		const int	j1,
		const int	recurrenceType
	)		`[virtual]`

Executes the SW/NW recurrence function for the given block.

Parameters:

[in,out]	row	Input: cells from the first row of the block, where row[k] represents cell (i0-1,j0+k); Output: the same range is used for write, but the output represents the last row of the block;
[in,out]	col	Input: cells from the first column of the partition, where col[k] represents cell (i0-1+k,j0-1). Note that the col vector contains the diag cell (i0-1,j0-1). Output: the same idea, but representing the last column of the partition. Note that col[0] represents the diag cell (i0-1,j0-1).
[in]	i0	start row
[in]	j0	start column
[in]	i1	end row
[in]	j1	end column