Class Index

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A	BufferedCellsWriter	CrosspointsFile	M	SeekableCellsReader
	BufferedStream	D		Sequence
AbstractAligner	BufferFactory		MasaNet	SequenceData
AbstractAlignerParameters	BufferLogger	dispatch_job_t	MasaNetCallbacks	SequenceInfo
AbstractAlignerSafe	C	dispatch_job_t::dispatch_params_t	MasaNetCLI	SequenceModifiers
AbstractBlockAligner		DummyCellsReader	MasaNetJob	SocketBuffer
AbstractBlockProcessor	cell_t	DummyCellsWriter	MasaNetStatus	SocketCellsReader
AbstractBlockPruning	CellsReader	F	match_result_t	SocketCellsWriter
AbstractDiagonalAligner	CellsWriter		N	SpecialRow
aligner_capabilities_t	classcomp	FileBuffer		SpecialRowFile
AlignerManager	CmdCreateRing	FileCellsReader	NullBuffer	SpecialRowRAM
AlignerPool	CmdDiscover	FileCellsWriter	O	SpecialRowReader
AlignerTester	CmdJoin	FileStream		SpecialRowsArea
AlignerUtils	CmdNotifyScore	FirstRow	output_format_t	SpecialRowsPartition
Alignment	CmdPeerList	G	P	SpecialRowWriter
AlignmentBinaryFile	CmdPeerRequest			split_args_t
AlignmentParams	CmdPeerResponse	gap_sequence_t	dispatch_job_t::dispatch_params_t::params_score_t	SplitCellsReader
B	CmdStatusRequest	gap_t	Partition	Timer::stat_t
	CmdStatusResponse	Grid	Peer	Status
BestScoreList	CmdTestRing	I	PeerList	T
BlockAlignerParameters	CmdUndiscover		Properties
BlockPruningDiagonal	Command	IAligner	R	TeeCellsReader
BlockPruningGenericN2	command_t	IAlignerParameters		Timer
BlocksFile	config_option_t	IllegalArgumentException	RecurrentTimer	total_score_t
Buffer	ConfigParser	IManager	ReversedCellsReader	U
Buffer2	Configs	InitialCellsReader	S
buffer2_statistics_t	coordinate_t	IOException		URLCellsReader
buffer_statistics_t	CPUBlockProcessor	J	score_params_t	URLCellsWriter
BufferedCellsReader	crosspoint_t		score_t
		Job

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