Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• AbstractBlockProcessor
  • CPUBlockProcessor
• AbstractBlockPruning
  • BlockPruningDiagonal
  • BlockPruningGenericN2
• aligner_capabilities_t
• AlignerPool
• AlignerTester
• AlignerUtils
• Alignment
• AlignmentBinaryFile
• AlignmentParams
• BestScoreList
• BlocksFile
• Buffer2
• buffer2_statistics_t
• buffer_statistics_t
• BufferedStream
  • BufferedCellsReader
  • BufferedCellsWriter
• BufferFactory
• BufferLogger
• cell_t
• CellsReader
  • Buffer
    • FileBuffer
    • NullBuffer
    • SocketBuffer
  • SeekableCellsReader
    • BufferedCellsReader
    • DummyCellsReader
    • FileCellsReader
    • FileStream
    • InitialCellsReader
    • ReversedCellsReader
    • SpecialRow
      • FirstRow
      • SpecialRowFile
      • SpecialRowRAM
    • SplitCellsReader
    • TeeCellsReader
  • SocketCellsReader
  • URLCellsReader
• CellsWriter
  • Buffer
  • BufferedCellsWriter
  • DummyCellsWriter
  • FileCellsWriter
  • FileStream
  • SocketCellsWriter
  • SpecialRow
  • URLCellsWriter
• classcomp
• Command
  • CmdCreateRing
  • CmdJoin
  • CmdNotifyScore
  • CmdPeerList
    • CmdDiscover
    • CmdPeerResponse
    • CmdUndiscover
  • CmdPeerRequest
  • CmdStatusRequest
  • CmdStatusResponse
  • CmdTestRing
• command_t
• config_option_t
• ConfigParser
• Configs
• coordinate_t
• crosspoint_t
• CrosspointsFile
• dispatch_job_t
• dispatch_job_t::dispatch_params_t
• gap_sequence_t
• gap_t
• Grid
• IAligner
  • AbstractAligner
    • AbstractAlignerSafe
    • AbstractBlockAligner
    • AbstractDiagonalAligner
• IAlignerParameters
  • AbstractAlignerParameters
    • BlockAlignerParameters
• IllegalArgumentException
• IManager
  • AlignerManager
• IOException
• Job
• MasaNetCallbacks
  • MasaNet
• MasaNetCLI
• MasaNetJob
• MasaNetStatus
• match_result_t
• output_format_t
• dispatch_job_t::dispatch_params_t::params_score_t
• Partition
• Peer
• PeerList
• Properties
• RecurrentTimer
• score_params_t
• score_t
• Sequence
• SequenceData
• SequenceInfo
• SequenceModifiers
• SpecialRowReader
• SpecialRowsArea
• SpecialRowsPartition
• SpecialRowWriter
• split_args_t
• Timer::stat_t
• Status
• Timer
• total_score_t