- f -

• FileBuffer() : FileBuffer
• FileCellsReader() : FileCellsReader
• FileCellsWriter() : FileCellsWriter
• FileStream() : FileStream
• finalize() : AbstractBlockAligner , IAligner , AbstractBlockPruning , BlockPruningDiagonal , BlockPruningGenericN2 , Peer , Alignment
• finalizeDiagonals() : AbstractDiagonalAligner
• finalizeIterations() : AbstractDiagonalAligner
• find_command() : MasaNetCLI
• findBestCell() : AlignerManager
• findFullGap() : AlignerManager
• findGoalCell() : AlignerManager
• FirstRow() : FirstRow
• flush() : SpecialRowWriter
• flushBlockScores() : AbstractDiagonalAligner
• flushLastCell() : AbstractDiagonalAligner
• flushLastColumn() : AbstractDiagonalAligner
• flushLastRow() : AbstractDiagonalAligner
• flushSpecialRows() : AbstractDiagonalAligner
• fopenStatistics() : Job
• fread_alignment_params() : AlignmentBinaryFile
• fread_alignment_result() : AlignmentBinaryFile
• fread_array() : AlignmentBinaryFile
• fread_dummy() : AlignmentBinaryFile
• fread_flags() : AlignmentBinaryFile
• fread_gaps() : AlignmentBinaryFile
• fread_header() : AlignmentBinaryFile
• fread_int1() : AlignmentBinaryFile
• fread_int2() : AlignmentBinaryFile
• fread_int4() : AlignmentBinaryFile
• fread_sequences() : AlignmentBinaryFile
• fread_str() : AlignmentBinaryFile
• fread_uint4_compressed() : AlignmentBinaryFile
• fwrite_alignment_params() : AlignmentBinaryFile
• fwrite_alignment_result() : AlignmentBinaryFile
• fwrite_array() : AlignmentBinaryFile
• fwrite_flags() : AlignmentBinaryFile
• fwrite_gaps() : AlignmentBinaryFile
• fwrite_header() : AlignmentBinaryFile
• fwrite_int1() : AlignmentBinaryFile
• fwrite_int2() : AlignmentBinaryFile
• fwrite_int4() : AlignmentBinaryFile
• fwrite_sequences() : AlignmentBinaryFile
• fwrite_str() : AlignmentBinaryFile
• fwrite_uint4_compressed() : AlignmentBinaryFile