Here is a list of all class members with links to the classes they belong to:

- f -

• f : cell_t
• file : BlocksFile , FileBuffer , FileStream , SpecialRowReader , CrosspointsFile , SpecialRowFile , Status , BufferLogger , FileCellsReader , FileCellsWriter
• FileBuffer() : FileBuffer
• FileCellsReader() : FileCellsReader
• FileCellsWriter() : FileCellsWriter
• filename : SequenceInfo , BlocksFile , FileBuffer , CrosspointsFile , TeeCellsReader , SpecialRowFile
• fileReader : TeeCellsReader
• FileStream() : FileStream
• fileWriter : TeeCellsReader
• finalize() : Peer , Alignment , AbstractBlockAligner , IAligner , AbstractBlockPruning , BlockPruningDiagonal , BlockPruningGenericN2
• finalizeDiagonals() : AbstractDiagonalAligner
• finalizeIterations() : AbstractDiagonalAligner
• find_command() : MasaNetCLI
• findBestCell() : AlignerManager
• findFullGap() : AlignerManager
• findGoalCell() : AlignerManager
• firstColumnInitType : AlignerManager
• firstColumnReader : AlignerManager , SpecialRowsPartition
• firstColumnTail : AbstractAligner
• firstColumnWriter : SpecialRowsPartition
• FirstRow() : FirstRow
• firstRow : SpecialRowsPartition
• firstRowFile : AlignerManager
• firstRowGapped : SpecialRowReader
• firstRowInitType : AlignerManager
• firstRowReader : AlignerManager , SpecialRowsPartition
• firstRowTail : AbstractAligner
• firstRowWriter : SpecialRowsPartition
• flush() : SpecialRowWriter
• flush_column_url : Job
• flushBlockScores() : AbstractDiagonalAligner
• flushIntervals : Job
• flushLastCell() : AbstractDiagonalAligner
• flushLastColumn() : AbstractDiagonalAligner
• flushLastRow() : AbstractDiagonalAligner
• flushSpecialRows() : AbstractDiagonalAligner
• fopenStatistics() : Job
• fork_processes : aligner_capabilities_t
• forkCount : AbstractAligner
• forkId : AbstractAlignerParameters
• forkWeights : AbstractAligner
• forwardData : SequenceData
• found : match_result_t
• foundCrosspoint : AlignerManager
• fread_alignment_params() : AlignmentBinaryFile
• fread_alignment_result() : AlignmentBinaryFile
• fread_array() : AlignmentBinaryFile
• fread_dummy() : AlignmentBinaryFile
• fread_flags() : AlignmentBinaryFile
• fread_gaps() : AlignmentBinaryFile
• fread_header() : AlignmentBinaryFile
• fread_int1() : AlignmentBinaryFile
• fread_int2() : AlignmentBinaryFile
• fread_int4() : AlignmentBinaryFile
• fread_sequences() : AlignmentBinaryFile
• fread_str() : AlignmentBinaryFile
• fread_uint4_compressed() : AlignmentBinaryFile
• func : command_t
• function : output_format_t
• fwrite_alignment_params() : AlignmentBinaryFile
• fwrite_alignment_result() : AlignmentBinaryFile
• fwrite_array() : AlignmentBinaryFile
• fwrite_flags() : AlignmentBinaryFile
• fwrite_gaps() : AlignmentBinaryFile
• fwrite_header() : AlignmentBinaryFile
• fwrite_int1() : AlignmentBinaryFile
• fwrite_int2() : AlignmentBinaryFile
• fwrite_int4() : AlignmentBinaryFile
• fwrite_sequences() : AlignmentBinaryFile
• fwrite_str() : AlignmentBinaryFile
• fwrite_uint4_compressed() : AlignmentBinaryFile