score_params_t Struct Reference

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Detailed Description

Defines the match/mismatch score and affine gap penalties.

Definition at line 100 of file libmasaTypes.hpp.

#include <libmasaTypes.hpp>

List of all members.

Public Attributes
int	match
	match score (positive).
int	mismatch
	mismatch penalty (negative).
int	gap_open
	gap opening penalty (positive).
int	gap_ext
	gap extension penalty (positive).

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Member Data Documentation

int score_params_t::gap_ext

gap extension penalty (positive).

Definition at line 108 of file libmasaTypes.hpp.

int score_params_t::gap_open

gap opening penalty (positive).

Definition at line 106 of file libmasaTypes.hpp.

int score_params_t::match

match score (positive).

Definition at line 102 of file libmasaTypes.hpp.

int score_params_t::mismatch

mismatch penalty (negative).

Definition at line 104 of file libmasaTypes.hpp.

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The documentation for this struct was generated from the following file:

• libmasaTypes.hpp