Detailed Description

Definition at line 27 of file AlignerUtils.hpp.

Static Public Member Functions
static void	splitBlocksEvenly (int *pos, int j0, int j1, int count)
	Splits the columns in n equal blocks.
static match_result_t	matchColumn (const cell_t buffer, const cell_t base, int len, int goalScore, int gap_open_penalty)

Member Function Documentation

match_result_t AlignerUtils::matchColumn	(	const cell_t *	buffer,
		const cell_t *	base,
		int	len,
		int	goalScore,
		int	gap_open_penalty
	)		`[static]`

Definition at line 50 of file AlignerUtils.cpp.

void AlignerUtils::splitBlocksEvenly	(	int *	pos,
		int	j0,
		int	j1,
		int	blocks
	)		`[static]`

Splits the columns in n equal blocks.

Parameters:

pos	A vector with (blocks+1) elements.
j0,j1	Range of the columns
blocks	Number of blocks to split.

Definition at line 38 of file AlignerUtils.cpp.

The documentation for this class was generated from the following files: