Here is a list of all file members with links to the files they belong to:

- s -

• SCORE_MATCH_MISMATCH : Constants.hpp
• SCORE_SIMILARITY_MATRIX : Constants.hpp
• SEND_ERROR_MSG : Peer.cpp
• SEQUENCE_TYPE_DNA : Constants.hpp
• SEQUENCE_TYPE_PROTEIN : Constants.hpp
• SEQUENCE_TYPE_RNA : Constants.hpp
• SEQUENCE_TYPE_UNKNOWN : Constants.hpp
• SEQUENCES_COUNT : libmasa.cpp
• SERVER_LISTENING : MasaNetStatus.hpp
• SERVER_SHUTDOWN : MasaNetStatus.hpp
• SMITH_WATERMAN : IManager.hpp
• SRA : default.h
• SRA_COMPRESSION_2_STEPS : Configs.hpp
• SRA_COMPRESSION_4BITS : Configs.hpp
• SRA_COMPRESSION_8BITS : Configs.hpp
• SRA_COMPRESSION_ENUM : Configs.hpp
• SRA_COMPRESSION_NONE : Configs.hpp
• SRA_COMPRESSION_VLC : Configs.hpp
• SRA_DECAY : Job.cpp
• SRA_STRATEGY_AUTO : Configs.hpp
• SRA_STRATEGY_ENUM : Configs.hpp
• SRA_STRATEGY_GREEDY : Configs.hpp
• stage1() : sw_stage1.cpp , sw_stage1.h
• stage2() : sw_stage2.cpp , sw_stage2.h
• stage2_pool_send() : sw_stage2.cpp , sw_stage2.h
• stage2_pool_wait() : sw_stage2.cpp , sw_stage2.h
• stage3() : sw_stage3.h , sw_stage3.cpp
• stage4() : sw_stage4.cpp , sw_stage4.h
• stage4_pool_wait() : sw_stage4.cpp , sw_stage4.h
• stage5() : sw_stage5.cpp , sw_stage5.h
• stage6() : sw_stage6.cpp , sw_stage6.h
• stage6_formats : sw_stage6.cpp , sw_stage6.h
• STAGE_1 : Configs.hpp , Job.hpp
• STAGE_2 : Configs.hpp , Job.hpp
• STAGE_3 : Job.hpp , Configs.hpp
• STAGE_4 : Configs.hpp , Job.hpp
• STAGE_4_EXECUTION_INTERLEAVED : Configs.hpp
• STAGE_4_EXECUTION_ORTHOGONAL : Configs.hpp
• STAGE_4_EXECUTION_PARALLEL : Configs.hpp
• STAGE_4_EXECUTION_TYPE_ENUM : Configs.hpp
• STAGE_5 : Configs.hpp , Job.hpp
• STAGE_6 : Configs.hpp , Job.hpp
• STAGE_GLOBAL : Job.hpp
• STAGE_TOOL : Job.hpp
• START_TYPE_GAP_H : IManager.hpp
• START_TYPE_GAP_V : IManager.hpp
• START_TYPE_MATCH : IManager.hpp
• STATE_CREATING_RING : MasaNetStatus.hpp
• STATE_FINISHING : MasaNetStatus.hpp
• STATE_IDLE : MasaNetStatus.hpp
• STATE_PROCESSING : MasaNetStatus.hpp
• STATE_READY : MasaNetStatus.hpp
• STATE_STARTING : MasaNetStatus.hpp
• STDC_HEADERS : config.h
• STRINGIFY : Configs.cpp
• SUPPORTED : capabilities.hpp