Here is a list of all file members with links to the files they belong to:
- d -
- DEBUG
: AlignerManager.cpp
, BestScoreList.cpp
, Buffer2.cpp
, SocketCellsWriter.cpp
, SpecialRowsPartition.cpp
, AbstractBlockAligner.cpp
, TeeCellsReader.cpp
, AbstractDiagonalAligner.cpp
, CPUBlockProcessor.cpp
, BufferedCellsReader.cpp
, Job.cpp
, AlignerUtils.cpp
, sw_stage1.cpp
, SpecialRowReader.cpp
, sw_stage2.cpp
, sw_stage3.cpp
, ConfigParser.cpp
, BufferedCellsWriter.cpp
, SpecialRowWriter.cpp
, sw_stage4.cpp
, sw_stage5.cpp
, FirstRow.cpp
, sw_stage6.cpp
, InitialCellsReader.cpp
, SpecialRowFile.cpp
, SpecialRowsArea.cpp
- def2str
: SpecialRowsPartition.cpp
- DEFAULT_BLOCK_SIZE
: BlockAlignerParameters.cpp
- DEFAULT_BLOCK_SIZE_STR
: BlockAlignerParameters.cpp
- DEFAULT_BUFFER_LIMIT
: libmasa.cpp
- DEFAULT_CONFIGS
: Configs.cpp
- DEFAULT_DISK_LIMIT
: libmasa.cpp
- DEFAULT_FLUSH_DISK_STRING
: libmasa.cpp
- DEFAULT_FLUSH_RAM_STRING
: libmasa.cpp
- DEFAULT_GRID_SIZE
: BlockAlignerParameters.cpp
- DEFAULT_GRID_SIZE_STR
: BlockAlignerParameters.cpp
- DEFAULT_MAX_ALIGNMENTS
: libmasa.cpp
- DEFAULT_MAX_ALIGNMENTS_STRING
: libmasa.cpp
- DEFAULT_MPS_STRING
: libmasa.cpp
- DEFAULT_PHASE_3_SIZE
: libmasa.cpp
- DEFAULT_PROMPT
: MasaNetCLI.cpp
- DEFAULT_RAM_LIMIT
: libmasa.cpp
- DEFAULT_SRA_PATH_GLOBAL
: Configs.cpp
- DEFAULT_SRA_PATH_STAGE1
: Configs.cpp
- DEFAULT_SRA_PATH_STAGE2
: Configs.cpp
- DEFAULT_SRA_PATH_STAGE3
: Configs.cpp
- DEFAULT_SRA_STRATEGY_GLOBAL
: Configs.cpp
- DEFAULT_SRA_STRATEGY_STAGE1
: Configs.cpp
- DEFAULT_SRA_STRATEGY_STAGE2
: Configs.cpp
- DEFAULT_SRA_STRATEGY_STAGE3
: Configs.cpp
- DEFAULT_TCP_PORT
: MasaNet.cpp
- DEFAULT_WORK_DIRECTORY
: libmasa.cpp
- DNA_GAP_EXT
: CPUBlockProcessor.hpp
, AbstractBlockAligner.cpp
- DNA_GAP_FIRST
: CPUBlockProcessor.hpp
, AbstractBlockAligner.cpp
- DNA_GAP_OPEN
: AbstractBlockAligner.cpp
, CPUBlockProcessor.hpp
- DNA_MATCH
: CPUBlockProcessor.hpp
, AbstractBlockAligner.cpp
- DNA_MISMATCH
: AbstractBlockAligner.cpp
, CPUBlockProcessor.hpp
