Job.hpp File Reference

#include <string>
#include <vector>
#include "../libmasa/libmasa.hpp"
#include "SpecialRowReader.hpp"
#include "SpecialRowWriter.hpp"
#include "CrosspointsFile.hpp"
#include "biology/biology.hpp"
#include "sra/SpecialRowsArea.hpp"
#include "configs/Configs.hpp"
#include "AlignerPool.hpp"

Go to the source code of this file.

Classes
class	Job
Defines
#define	STAGE_1   (1)
#define	STAGE_2   (2)
#define	STAGE_3   (3)
#define	STAGE_4   (4)
#define	STAGE_5   (5)
#define	STAGE_6   (6)
#define	STAGE_TOOL   (7)
#define	STAGE_GLOBAL   (0)
#define	ALIGNER_STATISTICS   (-1)
#define	AT_NOWHERE   (-1)
#define	AT_ANYWHERE   (0)
#define	AT_SEQUENCE_1   (1)
#define	AT_SEQUENCE_2   (2)
#define	AT_SEQUENCE_1_OR_2   (3)
#define	AT_SEQUENCE_1_AND_2   (4)

---

Define Documentation

#define ALIGNER_STATISTICS   (-1)

Definition at line 48 of file Job.hpp.

#define AT_ANYWHERE   (0)

Definition at line 51 of file Job.hpp.

#define AT_NOWHERE   (-1)

Definition at line 50 of file Job.hpp.

#define AT_SEQUENCE_1   (1)

Definition at line 52 of file Job.hpp.

#define AT_SEQUENCE_1_AND_2   (4)

Definition at line 55 of file Job.hpp.

#define AT_SEQUENCE_1_OR_2   (3)

Definition at line 54 of file Job.hpp.

#define AT_SEQUENCE_2   (2)

Definition at line 53 of file Job.hpp.

#define STAGE_1   (1)

Definition at line 40 of file Job.hpp.

#define STAGE_2   (2)

Definition at line 41 of file Job.hpp.

#define STAGE_3   (3)

Definition at line 42 of file Job.hpp.

#define STAGE_4   (4)

Definition at line 43 of file Job.hpp.

#define STAGE_5   (5)

Definition at line 44 of file Job.hpp.

#define STAGE_6   (6)

Definition at line 45 of file Job.hpp.

#define STAGE_GLOBAL   (0)

Definition at line 47 of file Job.hpp.

#define STAGE_TOOL   (7)

Definition at line 46 of file Job.hpp.