Constants.hpp File Reference

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Defines
#define	FLAG_CLEAR_N   0x0004
#define	FLAG_COMPLEMENT   0x0002
#define	FLAG_REVERSE   0x0001
#define	SEQUENCE_TYPE_DNA   (1)
#define	SEQUENCE_TYPE_RNA   (2)
#define	SEQUENCE_TYPE_PROTEIN   (3)
#define	SEQUENCE_TYPE_UNKNOWN   (255)
#define	ALIGNMENT_METHOD_GLOBAL   (1)
#define	ALIGNMENT_METHOD_LOCAL   (2)
#define	PENALTY_LINEAR_GAP   (1)
#define	PENALTY_AFFINE_GAP   (2)
#define	SCORE_MATCH_MISMATCH   (1)
#define	SCORE_SIMILARITY_MATRIX   (2)

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Define Documentation

#define ALIGNMENT_METHOD_GLOBAL   (1)

Definition at line 36 of file Constants.hpp.

#define ALIGNMENT_METHOD_LOCAL   (2)

Definition at line 37 of file Constants.hpp.

#define FLAG_CLEAR_N   0x0004

Definition at line 26 of file Constants.hpp.

#define FLAG_COMPLEMENT   0x0002

Definition at line 27 of file Constants.hpp.

#define FLAG_REVERSE   0x0001

Definition at line 28 of file Constants.hpp.

#define PENALTY_AFFINE_GAP   (2)

Definition at line 40 of file Constants.hpp.

#define PENALTY_LINEAR_GAP   (1)

Definition at line 39 of file Constants.hpp.

#define SCORE_MATCH_MISMATCH   (1)

Definition at line 42 of file Constants.hpp.

#define SCORE_SIMILARITY_MATRIX   (2)

Definition at line 43 of file Constants.hpp.

#define SEQUENCE_TYPE_DNA   (1)

Definition at line 30 of file Constants.hpp.

#define SEQUENCE_TYPE_PROTEIN   (3)

Definition at line 32 of file Constants.hpp.

#define SEQUENCE_TYPE_RNA   (2)

Definition at line 31 of file Constants.hpp.

#define SEQUENCE_TYPE_UNKNOWN   (255)

Definition at line 33 of file Constants.hpp.