libmasa.hpp File Reference

#include "libmasaTypes.hpp"
#include "IManager.hpp"
#include "IAligner.hpp"
#include "IAlignerParameter.hpp"
#include "parameters/AbstractAlignerParameters.hpp"
#include "capabilities.hpp"
#include "Partition.hpp"
#include "Grid.hpp"
#include "aligners/AbstractAligner.hpp"
#include "aligners/AbstractBlockAligner.hpp"
#include "aligners/AbstractDiagonalAligner.hpp"
#include "aligners/AbstractAlignerSafe.hpp"
#include "processors/AbstractBlockProcessor.hpp"
#include "processors/CPUBlockProcessor.hpp"
#include "utils/AlignerUtils.hpp"
#include "pruning/AbstractBlockPruning.hpp"
#include "pruning/BlockPruningDiagonal.hpp"
#include "pruning/BlockPruningGenericN2.hpp"

Go to the source code of this file.

Functions
int	libmasa_entry_point (int argc, char **argv, IAligner *aligner, char *aligner_header=NULL)
	Entry point for the MASA architecture.

---

Function Documentation

int libmasa_entry_point	(	int	argc,
		char **	argv,
		IAligner *	aligner,
		char *	aligner_header = NULL
	)

Entry point for the MASA architecture.

This function must be called in the main procedure of the extension. The main argc/argv parameter must be passed to the libmasa_entry_point in order to process the command line parameters.

See also:

The aligner/example/main.cpp source file contains a simple example of calling the int libmasa_entry_point function.

Parameters:

argc	number of arguments
argv	command line arguments
aligner	an instance of the IAligner that will execute the alignment procedure.
aligner_header	optional text to be print in the usage information.

Returns:

exit code.

Definition at line 641 of file libmasa.cpp.