MASA-Core: AbstractBlockProcessor.hpp Source File

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00001 /*******************************************************************************
00002  *
00003  * Copyright (c) 2010-2015   Edans Sandes
00004  *
00005  * This file is part of MASA-Core.
00006  * 
00007  * MASA-Core is free software: you can redistribute it and/or modify
00008  * it under the terms of the GNU General Public License as published by
00009  * the Free Software Foundation, either version 3 of the License, or
00010  * (at your option) any later version.
00011  * 
00012  * MASA-Core is distributed in the hope that it will be useful,
00013  * but WITHOUT ANY WARRANTY; without even the implied warranty of
00014  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
00015  * GNU General Public License for more details.
00016  * 
00017  * You should have received a copy of the GNU General Public License
00018  * along with MASA-Core.  If not, see <http://www.gnu.org/licenses/>.
00019  *
00020  ******************************************************************************/
00021 
00022 #ifndef ABSTRACTBLOCKPROCESSOR_HPP_
00023 #define ABSTRACTBLOCKPROCESSOR_HPP_
00024 
00025 #include "../libmasaTypes.hpp"
00026 
00027 class AbstractBlockProcessor {
00028 public:
00029         AbstractBlockProcessor();
00030         virtual ~AbstractBlockProcessor();
00031         virtual void setSequences(const char* seq0, const char* seq1, int seq0_len, int seq1_len) = 0;
00032         virtual void unsetSequences() = 0;
00033 
00034         virtual score_t processBlock(cell_t *row, cell_t *col,
00035                         const int i0, const int j0, const int i1, const int j1,
00036                         const int recurrenceType) = 0;
00037 };
00038 
00039 #endif /* ABSTRACTBLOCKPROCESSOR_HPP_ */