- s -

• SCORE_MATCH_MISMATCH : Constants.hpp
• SCORE_SIMILARITY_MATRIX : Constants.hpp
• SEND_ERROR_MSG : Peer.cpp
• SEQUENCE_TYPE_DNA : Constants.hpp
• SEQUENCE_TYPE_PROTEIN : Constants.hpp
• SEQUENCE_TYPE_RNA : Constants.hpp
• SEQUENCE_TYPE_UNKNOWN : Constants.hpp
• SEQUENCES_COUNT : libmasa.cpp
• SERVER_LISTENING : MasaNetStatus.hpp
• SERVER_SHUTDOWN : MasaNetStatus.hpp
• SMITH_WATERMAN : IManager.hpp
• SRA_COMPRESSION_2_STEPS : Configs.hpp
• SRA_COMPRESSION_4BITS : Configs.hpp
• SRA_COMPRESSION_8BITS : Configs.hpp
• SRA_COMPRESSION_ENUM : Configs.hpp
• SRA_COMPRESSION_NONE : Configs.hpp
• SRA_COMPRESSION_VLC : Configs.hpp
• SRA_DECAY : Job.cpp
• SRA_STRATEGY_AUTO : Configs.hpp
• SRA_STRATEGY_ENUM : Configs.hpp
• SRA_STRATEGY_GREEDY : Configs.hpp
• STAGE_1 : Configs.hpp , Job.hpp
• STAGE_2 : Configs.hpp , Job.hpp
• STAGE_3 : Configs.hpp , Job.hpp
• STAGE_4 : Configs.hpp , Job.hpp
• STAGE_4_EXECUTION_INTERLEAVED : Configs.hpp
• STAGE_4_EXECUTION_ORTHOGONAL : Configs.hpp
• STAGE_4_EXECUTION_PARALLEL : Configs.hpp
• STAGE_4_EXECUTION_TYPE_ENUM : Configs.hpp
• STAGE_5 : Job.hpp , Configs.hpp
• STAGE_6 : Job.hpp , Configs.hpp
• STAGE_GLOBAL : Job.hpp
• STAGE_TOOL : Job.hpp
• START_TYPE_GAP_H : IManager.hpp
• START_TYPE_GAP_V : IManager.hpp
• START_TYPE_MATCH : IManager.hpp
• STATE_CREATING_RING : MasaNetStatus.hpp
• STATE_FINISHING : MasaNetStatus.hpp
• STATE_IDLE : MasaNetStatus.hpp
• STATE_PROCESSING : MasaNetStatus.hpp
• STATE_READY : MasaNetStatus.hpp
• STATE_STARTING : MasaNetStatus.hpp
• STDC_HEADERS : config.h
• STRINGIFY : Configs.cpp
• SUPPORTED : capabilities.hpp