Classes
struct	cell_t
	Struct that represents a cell in the DP matrix. More...
struct	match_result_t
	Struct that notifies the match result in the Mayers-Miller matching procedure. More...
struct	score_t
	Represents a score in the DP matrix. More...
struct	score_params_t
	Defines the match/mismatch score and affine gap penalties. More...
Defines
#define	INF (999999999)
	Infinity number used in the cells of the DP matrix.
#define	MATCH_ALIGNED (0)
	Indicates that the matching procedure found the goal score adding the H component of both rows.
#define	MATCH_GAPPED (1)
	Indicates that the matching procedure found the goal score adding the E component of both rows (minus the GAP_OPENING penalty).
#define	MATCH_ERROR_1 (-1)
	Indicates that the matching procedure failed with (sum_match > goalScore)
#define	MATCH_ERROR_2 (-2)
	Indicates that the matching procedure failed with (sum_gap > goalScore)

Define Documentation

#define INF (999999999)

Infinity number used in the cells of the DP matrix.

Definition at line 46 of file libmasaTypes.hpp.

#define MATCH_ALIGNED (0)

Indicates that the matching procedure found the goal score adding the H component of both rows.

Definition at line 66 of file libmasaTypes.hpp.

#define MATCH_ERROR_1 (-1)

Indicates that the matching procedure failed with (sum_match > goalScore)

Definition at line 77 of file libmasaTypes.hpp.

#define MATCH_ERROR_2 (-2)

Indicates that the matching procedure failed with (sum_gap > goalScore)

Definition at line 82 of file libmasaTypes.hpp.

#define MATCH_GAPPED (1)

Indicates that the matching procedure found the goal score adding the E component of both rows (minus the GAP_OPENING penalty).

Definition at line 72 of file libmasaTypes.hpp.

Classes