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MASA-Core
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| close() | SpecialRowReader | |
| current | SpecialRowReader | [private] |
| directory | SpecialRowReader | [private] |
| file | SpecialRowReader | [private] |
| firstRowGapped | SpecialRowReader | [private] |
| getCol() const | SpecialRowReader | |
| getCurrentPosition() | SpecialRowReader | |
| getFilename(int row=-1, int col=-1) | SpecialRowReader | |
| getLargestInterval(int *max_i, int *max_j) | SpecialRowReader | |
| getRow() const | SpecialRowReader | |
| id | SpecialRowReader | [private] |
| j0 | SpecialRowReader | [private] |
| j1 | SpecialRowReader | [private] |
| loadSpecialRows() | SpecialRowReader | [private] |
| min_step | SpecialRowReader | [private] |
| nextSpecialRow(int row, int col, int min_dist) | SpecialRowReader | |
| open(int start) | SpecialRowReader | |
| read(cell_t *buf, int offset, int len) | SpecialRowReader | |
| score_params | SpecialRowReader | [private] |
| specialRowCoordinates | SpecialRowReader | [private] |
| SpecialRowReader(string directory, const score_params_t *score_params, bool firstRowGapped=false) | SpecialRowReader | |
| start | SpecialRowReader | [private] |
| ~SpecialRowReader() | SpecialRowReader | [virtual] |
1.7.6.1