This is the complete list of members for
Job, including all inherited members.
| addSequence(Sequence *sequence) | Job | |
| aligner | Job | |
| alignerPool | Job | [private] |
| alignment | Job | [private] |
| alignment_end | Job | |
| alignment_params | Job | [private] |
| alignment_start | Job | |
| block_pruning | Job | |
| bufferLimit | Job | [private] |
| calculateFlushIntervals(int max_deep, long long limit, int seq0_len, int seq1_len) | Job | [private] |
| clearSpecialRowsArea(SpecialRowsArea **area) | Job | |
| clearSpecialRowsAreas() | Job | [private] |
| configs | Job | |
| createPath(string path) | Job | [private] |
| crosspoints_path | Job | [private] |
| disk_limit | Job | |
| dump_blocks | Job | |
| dump_pruning_text_filename | Job | |
| flush_column_url | Job | |
| flushIntervals | Job | [private] |
| fopenStatistics(int stage, int id) | Job | |
| getAlignerPool() | Job | |
| getAlignment() const | Job | |
| getAlignmentBinaryFile(int id) | Job | |
| getAlignmentParams() const | Job | |
| getAlignmentTextFile(int id) | Job | |
| getBufferLimit() const | Job | |
| getCrosspointFile(int stage, int id, int deep=-1) | Job | |
| getFlushInterval(int step) | Job | |
| getPoolWaitId() const | Job | |
| getSequence(int index) | Job | |
| getSequenceCount() const | Job | |
| getSpecialRowsArea(int stage, int id, int deep=-1) | Job | |
| getSpecialRowsPath(int stage, int id, int deep=-1) | Job | [private] |
| getSRALimit() | Job | |
| getWorkPath() | Job | |
| info_filename | Job | [private] |
| initialize() | Job | |
| initializeWorkPath() | Job | [private] |
| inputBufferLogFile | Job | |
| Job(int sequencesCount) | Job | |
| last_crosspoint_id | Job | [private] |
| load_column_url | Job | |
| loadSequenceData(Sequence *sequence) | Job | |
| max_alignments | Job | |
| maxFlushDeep | Job | [private] |
| outputBufferLogFile | Job | |
| peer_connect | Job | |
| peer_listen_port | Job | |
| pool_shared_path | Job | [private] |
| pool_wait_id | Job | [private] |
| predicted_traceback | Job | |
| ram_limit | Job | |
| resolve_env(string in) | Job | [private] |
| sequences | Job | [private] |
| setAlignment(Alignment *alignment) | Job | |
| setBufferLimit(int bufferLimit) | Job | |
| setPoolWaitId(int id) | Job | |
| setSharedPath(string sharedPath) | Job | |
| setSpecialRowsPath(string specialRowsPath) | Job | |
| setWorkPath(string workPath) | Job | |
| special_rows_path | Job | [private] |
| specialRowsAreas | Job | [private] |
| stage4_maximum_partition_size | Job | |
| stage4_orthogonal_execution | Job | |
| stage6_output_format | Job | |
| statistics_filename | Job | [private] |
| status_filename | Job | [private] |
| work_path | Job | [private] |
| ~Job() | Job | [virtual] |
