IAligner Member List

This is the complete list of members for IAligner, including all inherited members.

alignPartition(Partition partition)=0	IAligner	[pure virtual]
clearStatistics()=0	IAligner	[pure virtual]
finalize()=0	IAligner	[pure virtual]
getCapabilities()=0	IAligner	[pure virtual]
getForkWeights()=0	IAligner	[pure virtual]
getGrid() const =0	IAligner	[pure virtual]
getParameters()=0	IAligner	[pure virtual]
getProcessedCells()=0	IAligner	[pure virtual]
getProgressString() const =0	IAligner	[pure virtual]
getScoreParameters()=0	IAligner	[pure virtual]
IAligner()	IAligner	[inline, protected]
initialize()=0	IAligner	[pure virtual]
matchLastColumn(const cell_t *buffer, const cell_t *base, int len, int goalScore)=0	IAligner	[pure virtual]
printFinalStatistics(FILE *file)=0	IAligner	[pure virtual]
printInitialStatistics(FILE *file)=0	IAligner	[pure virtual]
printStageStatistics(FILE *file)=0	IAligner	[pure virtual]
printStatistics(FILE *file)=0	IAligner	[pure virtual]
setManager(IManager *manager)=0	IAligner	[pure virtual]
setSequences(const char *seq0, const char *seq1, int seq0_len, int seq1_len)=0	IAligner	[pure virtual]
unsetSequences()=0	IAligner	[pure virtual]
~IAligner()	IAligner	[inline, protected]