This is the complete list of members for
AlignmentBinaryFile, including all inherited members.
| fread_alignment_params(vector< SequenceInfo * > sequences, FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_alignment_result(AlignmentParams *params, FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_array(char *array, const int len, FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_dummy(const int len, FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_flags(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_gaps(vector< gap_t > *gaps, FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_header(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_int1(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_int2(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_int4(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_sequences(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_str(FILE *file) | AlignmentBinaryFile | [private, static] |
| fread_uint4_compressed(FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_alignment_params(AlignmentParams *params, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_alignment_result(Alignment *alignment, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_array(const char *array, const int len, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_flags(SequenceModifiers *modifiers, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_gaps(vector< gap_t > *gaps, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_header(FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_int1(const unsigned char i, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_int2(const short i, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_int4(const int i, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_sequences(vector< SequenceInfo * > sequences, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_str(const char *str, FILE *file) | AlignmentBinaryFile | [private, static] |
| fwrite_uint4_compressed(const unsigned int i, FILE *file) | AlignmentBinaryFile | [private, static] |
| read(string filename) | AlignmentBinaryFile | [static] |
| write(string filename, Alignment *alignment) | AlignmentBinaryFile | [static] |
