MASA-Core: Common.hpp Source File

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00001 /*******************************************************************************
00002  *
00003  * Copyright (c) 2010-2015   Edans Sandes
00004  *
00005  * This file is part of MASA-Core.
00006  * 
00007  * MASA-Core is free software: you can redistribute it and/or modify
00008  * it under the terms of the GNU General Public License as published by
00009  * the Free Software Foundation, either version 3 of the License, or
00010  * (at your option) any later version.
00011  * 
00012  * MASA-Core is distributed in the hope that it will be useful,
00013  * but WITHOUT ANY WARRANTY; without even the implied warranty of
00014  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
00015  * GNU General Public License for more details.
00016  * 
00017  * You should have received a copy of the GNU General Public License
00018  * along with MASA-Core.  If not, see <http://www.gnu.org/licenses/>.
00019  *
00020  ******************************************************************************/
00021 
00022 #pragma once
00023 
00024 #include "exceptions/exceptions.hpp"
00025 #include "AlignerManager.hpp"
00026 #include "Job.hpp"
00027 #include "SpecialRowReader.hpp"
00028 #include "SpecialRowWriter.hpp"
00029 #include "CrosspointsFile.hpp"
00030 #include "Timer.hpp"
00031 #include "RecurrentTimer.hpp"
00032 #include "Status.hpp"
00033 #include "BestScoreList.hpp"
00034 #include "BlocksFile.hpp"
00035 #include "macros.hpp"
00036 #include "biology/biology.hpp"
00037 #include "sra/sra.hpp"
00038 #include "configs/Configs.hpp"
00039 #include "utils.hpp"