AlignerManager.hpp File Reference

#include "../libmasa/libmasa.hpp"
#include "biology/Sequence.hpp"
#include "io/CellsReader.hpp"
#include "io/CellsWriter.hpp"
#include "sra/SpecialRowsPartition.hpp"
#include "BlocksFile.hpp"
#include "BestScoreList.hpp"
#include "Job.hpp"

Go to the source code of this file.

Classes
class	AlignerManager
Typedefs
typedef void(*	callback_f )(int i, int j, int len, cell_t *data)
typedef void(*	callback_score_f )(score_t score, int bx, int by)

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Typedef Documentation

typedef void(* callback_f)(int i, int j, int len, cell_t *data)

Definition at line 37 of file AlignerManager.hpp.

typedef void(* callback_score_f)(score_t score, int bx, int by)

Definition at line 38 of file AlignerManager.hpp.