Bibliographic References

[1]

Edans Sandes and Alba Melo. CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. In R. Govindarajan, David A. Padua, and Mary W. Hall, editors, PPOPP, pages 137–146. ACM, 2010.

[2]

Edans Sandes and Alba Melo. Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. In IPDPS, pages 1199–1211, 2011.

[3]

Edans Sandes and Alba Melo. Retrieving smith-waterman alignments with optimizations for megabase biological sequences using gpu. IEEE Transactions on Parallel and Distributed Systems, 99(PrePrints), 2012.

[4]

Edans Sandes, Guillermo Miranda, Alba C. M. A. de Melo, Xavier Martorell, and Eduard Ayguadé. Fine-grain parallel megabase sequence comparison with multiple heterogeneous gpus. In PPOPP, pages 383–384, 2014.

[5]

Edans Sandes, Guillermo Miranda, Alba Melo, Xavier Martorell, and Eduard Ayguadé. Cudalign 3.0: Parallel biological sequence comparison in large gpu clusters. In CCGRID, pages 160–169, 2014.